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deseq2 tool  (BioCloud Inc)

 
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    BioCloud Inc deseq2 tool
    Deseq2 Tool, supplied by BioCloud Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/deseq2 tool/product/BioCloud Inc
    Average 90 stars, based on 1 article reviews
    deseq2 tool - by Bioz Stars, 2026-04
    90/100 stars

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    Volcano map and selective signal analysis of DEGs and Venn map of DEGs between EM pigs and HB pigs at the same stage. ( a ) Each volcano plot displays gene expression changes at different time points (1 day, 30 days, 60 days, 90 days, and 120 days). The x -axis represents the log2 fold change, and the y -axis shows the −Log10 p -value. Genes are color-coded as follows: gray (nonsignificant), blue (significant log2 fold change only), green (significant p -value only), and red (both significant). The vertical dashed lines indicate a 2-fold change threshold, and the horizontal dashed line represents the significance threshold at p < 0.05. The total number of variables analyzed is 9338. ( b ) Venn diagram displaying the overlap of genes identified by XP-EHH, the F ST /θ π ratio, and <t>DESeq2</t> differential expression analysis. A total of 41 genes were identified by all three methods, as shown in the central overlapping region.
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    Volcano map and selective signal analysis of DEGs and Venn map of DEGs between EM pigs and HB pigs at the same stage. ( a ) Each volcano plot displays gene expression changes at different time points (1 day, 30 days, 60 days, 90 days, and 120 days). The x -axis represents the log2 fold change, and the y -axis shows the −Log10 p -value. Genes are color-coded as follows: gray (nonsignificant), blue (significant log2 fold change only), green (significant p -value only), and red (both significant). The vertical dashed lines indicate a 2-fold change threshold, and the horizontal dashed line represents the significance threshold at p < 0.05. The total number of variables analyzed is 9338. ( b ) Venn diagram displaying the overlap of genes identified by XP-EHH, the F ST /θ π ratio, and DESeq2 differential expression analysis. A total of 41 genes were identified by all three methods, as shown in the central overlapping region.

    Journal: International Journal of Molecular Sciences

    Article Title: Integration of Multiomics Data Reveals Selection Characteristics of ITGB1 That Are Associated with Size Differentiation in Pigs

    doi: 10.3390/ijms26041569

    Figure Lengend Snippet: Volcano map and selective signal analysis of DEGs and Venn map of DEGs between EM pigs and HB pigs at the same stage. ( a ) Each volcano plot displays gene expression changes at different time points (1 day, 30 days, 60 days, 90 days, and 120 days). The x -axis represents the log2 fold change, and the y -axis shows the −Log10 p -value. Genes are color-coded as follows: gray (nonsignificant), blue (significant log2 fold change only), green (significant p -value only), and red (both significant). The vertical dashed lines indicate a 2-fold change threshold, and the horizontal dashed line represents the significance threshold at p < 0.05. The total number of variables analyzed is 9338. ( b ) Venn diagram displaying the overlap of genes identified by XP-EHH, the F ST /θ π ratio, and DESeq2 differential expression analysis. A total of 41 genes were identified by all three methods, as shown in the central overlapping region.

    Article Snippet: The DESeq2 tool (v1.46) on the Meiji BioCloud platform ( https://cloud.majorbio.com/ , accessed on 25 April 2024) [ ] was employed for this analysis, applying screening criteria of |log2Fold Change| > 1 and a Q value < 0.05 to effectively control the false-positive rate.

    Techniques: Gene Expression, Quantitative Proteomics